Package: sigQC 0.1.24

sigQC: Quality Control Metrics for Gene Signatures

Provides gene signature quality control metrics in publication ready plots. Namely, enables the visualization of properties such as expression, variability, correlation, and comparison of methods of standardisation and scoring metrics.

Authors:Andrew Dhawan [aut, cre], Alessandro Barberis [aut], Wei-Chen Cheng [aut], Francesca Buffa [aut, ths]

sigQC_0.1.24.tar.gz
sigQC_0.1.24.zip(r-4.5)sigQC_0.1.24.zip(r-4.4)sigQC_0.1.24.zip(r-4.3)
sigQC_0.1.24.tgz(r-4.5-any)sigQC_0.1.24.tgz(r-4.4-any)sigQC_0.1.24.tgz(r-4.3-any)
sigQC_0.1.24.tar.gz(r-4.5-noble)sigQC_0.1.24.tar.gz(r-4.4-noble)
sigQC_0.1.24.tgz(r-4.4-emscripten)sigQC_0.1.24.tgz(r-4.3-emscripten)
sigQC.pdf |sigQC.html
sigQC/json (API)

# Install 'sigQC' in R:
install.packages('sigQC', repos = c('https://andrewdhawan.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/andrewdhawan/sigqc/issues

On CRAN:

4.89 score 4 stars 13 scripts 232 downloads 3 mentions 1 exports 134 dependencies

Last updated 6 months agofrom:9599d1380f. Checks:1 OK, 7 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 14 2025
R-4.5-winNOTEFeb 14 2025
R-4.5-macNOTEFeb 14 2025
R-4.5-linuxNOTEFeb 14 2025
R-4.4-winNOTEFeb 14 2025
R-4.4-macNOTEFeb 14 2025
R-4.3-winNOTEFeb 14 2025
R-4.3-macNOTEFeb 14 2025

Exports:make_all_plots

Dependencies:abindadditivityTestsannotateAnnotationDbiaskpassassortheadbeachmatBHbiclustBiobaseBiocFileCacheBiocGenericsBiocParallelBiocSingularBiostringsbitbit64bitopsblobcachemcaToolscirclizeclasscliclueclustercodetoolscolorspaceComplexHeatmapcpp11crayoncurlDBIdbplyrDelayedArrayDelayedMatrixStatsdigestdoParalleldplyrfansifarverfastmapfilelockflexclustfmsbforeachformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesGetoptLongggplot2GlobalOptionsgluegplotsgraphgridGraphicsGSEABaseGSVAgtablegtoolsh5mreadHDF5ArrayhttrIRangesirlbaisobanditeratorsjsonliteKEGGRESTKernSmoothlabelinglambda.rlatticelifecyclemagickmagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmemoisemgcvmimemodeltoolsmomentsmunsellnlmennetopensslpillarpkgconfigplogrpngpurrrR6RColorBrewerRcpprhdf5rhdf5filtersRhdf5librjsonrlangRSQLitersvdS4ArraysS4VectorsScaledMatrixscalesshapeSingleCellExperimentsnowSparseArraysparseMatrixStatsSpatialExperimentstringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrsviridisLitewithrXMLxtableXVector

sigQC: Gene Signature Quality Control

Rendered fromvignette.Rmdusingknitr::rmarkdownon Feb 14 2025.

Last update: 2024-08-18
Started: 2018-06-12