Package: sigQC 0.1.24

sigQC: Quality Control Metrics for Gene Signatures

Provides gene signature quality control metrics in publication ready plots. Namely, enables the visualization of properties such as expression, variability, correlation, and comparison of methods of standardisation and scoring metrics.

Authors:Andrew Dhawan [aut, cre], Alessandro Barberis [aut], Wei-Chen Cheng [aut], Francesca Buffa [aut, ths]

sigQC_0.1.24.tar.gz
sigQC_0.1.24.zip(r-4.5)sigQC_0.1.24.zip(r-4.4)sigQC_0.1.24.zip(r-4.3)
sigQC_0.1.24.tgz(r-4.4-any)sigQC_0.1.24.tgz(r-4.3-any)
sigQC_0.1.24.tar.gz(r-4.5-noble)sigQC_0.1.24.tar.gz(r-4.4-noble)
sigQC_0.1.24.tgz(r-4.4-emscripten)sigQC_0.1.24.tgz(r-4.3-emscripten)
sigQC.pdf |sigQC.html
sigQC/json (API)

# Install 'sigQC' in R:
install.packages('sigQC', repos = c('https://andrewdhawan.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/andrewdhawan/sigqc/issues

On CRAN:

4.78 score 4 stars 9 scripts 234 downloads 3 mentions 1 exports 134 dependencies

Last updated 3 months agofrom:9599d1380f. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 16 2024
R-4.5-winNOTENov 16 2024
R-4.5-linuxNOTENov 16 2024
R-4.4-winNOTENov 16 2024
R-4.4-macNOTENov 16 2024
R-4.3-winNOTENov 16 2024
R-4.3-macNOTENov 16 2024

Exports:make_all_plots

Dependencies:abindadditivityTestsannotateAnnotationDbiaskpassassortheadbeachmatBHbiclustBiobaseBiocFileCacheBiocGenericsBiocParallelBiocSingularBiostringsbitbit64bitopsblobcachemcaToolscirclizeclasscliclueclustercodetoolscolorspaceComplexHeatmapcpp11crayoncurlDBIdbplyrDelayedArrayDelayedMatrixStatsdigestdoParalleldplyrfansifarverfastmapfilelockflexclustfmsbforeachformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesGetoptLongggplot2GlobalOptionsgluegplotsgraphgridGraphicsGSEABaseGSVAgtablegtoolsHDF5ArrayhttrIRangesirlbaisobanditeratorsjsonliteKEGGRESTKernSmoothlabelinglambda.rlatticelifecyclemagickmagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmemoisemgcvmimemodeltoolsmomentsmunsellnlmennetopensslpillarpkgconfigplogrpngpurrrR6RColorBrewerRcpprhdf5rhdf5filtersRhdf5librjsonrlangRSQLitersvdS4ArraysS4VectorsScaledMatrixscalesshapeSingleCellExperimentsnowSparseArraysparseMatrixStatsSpatialExperimentstringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrsviridisLitewithrXMLxtableXVectorzlibbioc

sigQC: Gene Signature Quality Control

Rendered fromvignette.Rmdusingknitr::rmarkdownon Nov 16 2024.

Last update: 2024-08-18
Started: 2018-06-12