Package: sigQC 0.1.24
sigQC: Quality Control Metrics for Gene Signatures
Provides gene signature quality control metrics in publication ready plots. Namely, enables the visualization of properties such as expression, variability, correlation, and comparison of methods of standardisation and scoring metrics.
Authors:
sigQC_0.1.24.tar.gz
sigQC_0.1.24.zip(r-4.5)sigQC_0.1.24.zip(r-4.4)sigQC_0.1.24.zip(r-4.3)
sigQC_0.1.24.tgz(r-4.5-any)sigQC_0.1.24.tgz(r-4.4-any)sigQC_0.1.24.tgz(r-4.3-any)
sigQC_0.1.24.tar.gz(r-4.5-noble)sigQC_0.1.24.tar.gz(r-4.4-noble)
sigQC_0.1.24.tgz(r-4.4-emscripten)sigQC_0.1.24.tgz(r-4.3-emscripten)
sigQC.pdf |sigQC.html✨
sigQC/json (API)
# Install 'sigQC' in R: |
install.packages('sigQC', repos = c('https://andrewdhawan.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/andrewdhawan/sigqc/issues
Last updated 6 months agofrom:9599d1380f. Checks:1 OK, 7 NOTE. Indexed: yes.
Target | Result | Latest binary |
---|---|---|
Doc / Vignettes | OK | Feb 14 2025 |
R-4.5-win | NOTE | Feb 14 2025 |
R-4.5-mac | NOTE | Feb 14 2025 |
R-4.5-linux | NOTE | Feb 14 2025 |
R-4.4-win | NOTE | Feb 14 2025 |
R-4.4-mac | NOTE | Feb 14 2025 |
R-4.3-win | NOTE | Feb 14 2025 |
R-4.3-mac | NOTE | Feb 14 2025 |
Exports:make_all_plots
Dependencies:abindadditivityTestsannotateAnnotationDbiaskpassassortheadbeachmatBHbiclustBiobaseBiocFileCacheBiocGenericsBiocParallelBiocSingularBiostringsbitbit64bitopsblobcachemcaToolscirclizeclasscliclueclustercodetoolscolorspaceComplexHeatmapcpp11crayoncurlDBIdbplyrDelayedArrayDelayedMatrixStatsdigestdoParalleldplyrfansifarverfastmapfilelockflexclustfmsbforeachformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesGetoptLongggplot2GlobalOptionsgluegplotsgraphgridGraphicsGSEABaseGSVAgtablegtoolsh5mreadHDF5ArrayhttrIRangesirlbaisobanditeratorsjsonliteKEGGRESTKernSmoothlabelinglambda.rlatticelifecyclemagickmagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmemoisemgcvmimemodeltoolsmomentsmunsellnlmennetopensslpillarpkgconfigplogrpngpurrrR6RColorBrewerRcpprhdf5rhdf5filtersRhdf5librjsonrlangRSQLitersvdS4ArraysS4VectorsScaledMatrixscalesshapeSingleCellExperimentsnowSparseArraysparseMatrixStatsSpatialExperimentstringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrsviridisLitewithrXMLxtableXVector
Readme and manuals
Help Manual
Help page | Topics |
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make_all_plots.R | make_all_plots |