Package: sigQC 0.1.24

sigQC: Quality Control Metrics for Gene Signatures

Provides gene signature quality control metrics in publication ready plots. Namely, enables the visualization of properties such as expression, variability, correlation, and comparison of methods of standardisation and scoring metrics.

Authors:Andrew Dhawan [aut, cre], Alessandro Barberis [aut], Wei-Chen Cheng [aut], Francesca Buffa [aut, ths]

sigQC_0.1.24.tar.gz
sigQC_0.1.24.zip(r-4.5)sigQC_0.1.24.zip(r-4.4)sigQC_0.1.24.zip(r-4.3)
sigQC_0.1.24.tgz(r-4.4-any)sigQC_0.1.24.tgz(r-4.3-any)
sigQC_0.1.24.tar.gz(r-4.5-noble)sigQC_0.1.24.tar.gz(r-4.4-noble)
sigQC_0.1.24.tgz(r-4.4-emscripten)sigQC_0.1.24.tgz(r-4.3-emscripten)
sigQC.pdf |sigQC.html
sigQC/json (API)

# Install 'sigQC' in R:
install.packages('sigQC', repos = c('https://andrewdhawan.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/andrewdhawan/sigqc/issues

On CRAN:

1 exports 4 stars 1.77 score 134 dependencies 3 mentions 9 scripts 391 downloads

Last updated 1 months agofrom:9599d1380f. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 17 2024
R-4.5-winNOTESep 17 2024
R-4.5-linuxNOTESep 17 2024
R-4.4-winNOTESep 17 2024
R-4.4-macNOTESep 17 2024
R-4.3-winNOTESep 17 2024
R-4.3-macNOTESep 17 2024

Exports:make_all_plots

Dependencies:abindadditivityTestsannotateAnnotationDbiaskpassassortheadbeachmatBHbiclustBiobaseBiocFileCacheBiocGenericsBiocParallelBiocSingularBiostringsbitbit64bitopsblobcachemcaToolscirclizeclasscliclueclustercodetoolscolorspaceComplexHeatmapcpp11crayoncurlDBIdbplyrDelayedArrayDelayedMatrixStatsdigestdoParalleldplyrfansifarverfastmapfilelockflexclustfmsbforeachformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesGetoptLongggplot2GlobalOptionsgluegplotsgraphgridGraphicsGSEABaseGSVAgtablegtoolsHDF5ArrayhttrIRangesirlbaisobanditeratorsjsonliteKEGGRESTKernSmoothlabelinglambda.rlatticelifecyclemagickmagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmemoisemgcvmimemodeltoolsmomentsmunsellnlmennetopensslpillarpkgconfigplogrpngpurrrR6RColorBrewerRcpprhdf5rhdf5filtersRhdf5librjsonrlangRSQLitersvdS4ArraysS4VectorsScaledMatrixscalesshapeSingleCellExperimentsnowSparseArraysparseMatrixStatsSpatialExperimentstringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrsviridisLitewithrXMLxtableXVectorzlibbioc

sigQC: Gene Signature Quality Control

Rendered fromvignette.Rmdusingknitr::rmarkdownon Sep 17 2024.

Last update: 2024-08-18
Started: 2018-06-12